Package: clipp 1.1.1

clipp: Calculating Likelihoods by Pedigree Paring

A fast and general implementation of the Elston-Stewart algorithm that can calculate the likelihoods of large and complex pedigrees. References for the Elston-Stewart algorithm are Elston & Stewart (1971) <doi:10.1159/000152448>, Lange & Elston (1975) <doi:10.1159/000152714> and Cannings et al. (1978) <doi:10.2307/1426718>.

Authors:James Dowty [aut, cre], Kevin Wong [aut]

clipp_1.1.1.tar.gz
clipp_1.1.1.zip(r-4.7)clipp_1.1.1.zip(r-4.6)clipp_1.1.1.zip(r-4.5)
clipp_1.1.1.tgz(r-4.6-any)clipp_1.1.1.tgz(r-4.5-any)
clipp_1.1.1.tar.gz(r-4.7-any)clipp_1.1.1.tar.gz(r-4.6-any)
clipp_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
clipp/json (API)

# Install 'clipp' in R:
install.packages('clipp', repos = c('https://jgdowty.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • dat_large - Simulated data on one family with approximately 10,000 members
  • dat_small - Simulated data on 10 families with approximately 100 members each
  • penet_large - A penetrance matrix relating the phenotypes in 'dat_large' to three genotypes
  • penet_small - A penetrance matrix relating the phenotypes of 'dat_small' to three genotypes

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.48 score 1 packages 4 scripts 311 downloads 9 exports 0 dependencies

Last updated from:43c693b066. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK147
source / vignettesOK157
linux-release-x86_64OK116
macos-release-arm64OK124
macos-oldrel-arm64OK118
windows-develOK77
windows-releaseOK64
windows-oldrelOK65
wasm-releaseOK90

Exports:combine_locigeno_freq_monogenicgeno_freq_phasedgeno_freq_polygenicgenotype_probabilitiespedigree_loglikelihoodtrans_monogenictrans_phasedtrans_polygenic

Dependencies:

Vignette for clipp

Rendered fromusing_clipp.Rmdusingknitr::rmarkdownon May 23 2026.

Last update: 2022-07-12
Started: 2022-07-12