Package: clipp 1.1.1

clipp: Calculating Likelihoods by Pedigree Paring

A fast and general implementation of the Elston-Stewart algorithm that can calculate the likelihoods of large and complex pedigrees. References for the Elston-Stewart algorithm are Elston & Stewart (1971) <doi:10.1159/000152448>, Lange & Elston (1975) <doi:10.1159/000152714> and Cannings et al. (1978) <doi:10.2307/1426718>.

Authors:James Dowty [aut, cre], Kevin Wong [aut]

clipp_1.1.1.tar.gz
clipp_1.1.1.zip(r-4.5)clipp_1.1.1.zip(r-4.4)clipp_1.1.1.zip(r-4.3)
clipp_1.1.1.tgz(r-4.4-any)clipp_1.1.1.tgz(r-4.3-any)
clipp_1.1.1.tar.gz(r-4.5-noble)clipp_1.1.1.tar.gz(r-4.4-noble)
clipp_1.1.1.tgz(r-4.4-emscripten)clipp_1.1.1.tgz(r-4.3-emscripten)
clipp.pdf |clipp.html✨
clipp/json (API)

# Install 'clipp' in R:
install.packages('clipp', repos = c('https://jgdowty.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • dat_large - Simulated data on one family with approximately 10,000 members
  • dat_small - Simulated data on 10 families with approximately 100 members each
  • penet_large - A penetrance matrix relating the phenotypes in 'dat_large' to three genotypes
  • penet_small - A penetrance matrix relating the phenotypes of 'dat_small' to three genotypes

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 3 scripts 259 downloads 9 exports 0 dependencies

Last updated 2 years agofrom:43c693b066. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winOKNov 08 2024
R-4.5-linuxOKNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:combine_locigeno_freq_monogenicgeno_freq_phasedgeno_freq_polygenicgenotype_probabilitiespedigree_loglikelihoodtrans_monogenictrans_phasedtrans_polygenic

Dependencies:

Vignette for clipp

Rendered fromusing_clipp.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2022-07-12
Started: 2022-07-12